Strength, Stability, and cis-Motifs of In silico Identified Phloem-Specific Promoters in Brassica juncea (L.)
Identifieur interne : 000050 ( Main/Exploration ); précédent : 000049; suivant : 000051Strength, Stability, and cis-Motifs of In silico Identified Phloem-Specific Promoters in Brassica juncea (L.)
Auteurs : Murali Krishna Koramutla [Inde] ; Deepa Bhatt [Inde] ; Manisha Negi [Inde] ; Perumal Venkatachalam [Inde] ; Pradeep K. Jain [Inde] ; Ramcharan Bhattacharya [Inde]Source :
- Frontiers in Plant Science [ 1664-462X ] ; 2016.
Abstract
Aphids, a hemipteran group of insects pose a serious threat to many of the major crop species including
Url:
DOI: 10.3389/fpls.2016.00457
PubMed: 27148290
PubMed Central: 4834444
Affiliations:
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<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Strength, Stability, and <italic>cis</italic>-Motifs of <italic>In silico</italic> Identified Phloem-Specific Promoters in <italic>Brassica juncea</italic> (L.)</title><author><name sortKey="Koramutla, Murali Krishna" sort="Koramutla, Murali Krishna" uniqKey="Koramutla M" first="Murali Krishna" last="Koramutla">Murali Krishna Koramutla</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>National Research Centre on Plant Biotechnology, Indian Agricultural Research Institute Campus</institution><country>New Delhi, India</country></nlm:aff><country xml:lang="fr">Inde</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Bhatt, Deepa" sort="Bhatt, Deepa" uniqKey="Bhatt D" first="Deepa" last="Bhatt">Deepa Bhatt</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>National Research Centre on Plant Biotechnology, Indian Agricultural Research Institute Campus</institution><country>New Delhi, India</country></nlm:aff><country xml:lang="fr">Inde</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Negi, Manisha" sort="Negi, Manisha" uniqKey="Negi M" first="Manisha" last="Negi">Manisha Negi</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>National Research Centre on Plant Biotechnology, Indian Agricultural Research Institute Campus</institution><country>New Delhi, India</country></nlm:aff><country xml:lang="fr">Inde</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Venkatachalam, Perumal" sort="Venkatachalam, Perumal" uniqKey="Venkatachalam P" first="Perumal" last="Venkatachalam">Perumal Venkatachalam</name><affiliation wicri:level="1"><nlm:aff id="aff2"><institution>Department of Biotechnology, Periyar University</institution><country>Salem, India</country></nlm:aff><country xml:lang="fr">Inde</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Jain, Pradeep K" sort="Jain, Pradeep K" uniqKey="Jain P" first="Pradeep K." last="Jain">Pradeep K. Jain</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>National Research Centre on Plant Biotechnology, Indian Agricultural Research Institute Campus</institution><country>New Delhi, India</country></nlm:aff><country xml:lang="fr">Inde</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Bhattacharya, Ramcharan" sort="Bhattacharya, Ramcharan" uniqKey="Bhattacharya R" first="Ramcharan" last="Bhattacharya">Ramcharan Bhattacharya</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>National Research Centre on Plant Biotechnology, Indian Agricultural Research Institute Campus</institution><country>New Delhi, India</country></nlm:aff><country xml:lang="fr">Inde</country><wicri:regionArea></wicri:regionArea></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">27148290</idno><idno type="pmc">4834444</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4834444</idno><idno type="RBID">PMC:4834444</idno><idno type="doi">10.3389/fpls.2016.00457</idno><date when="2016">2016</date><idno type="wicri:Area/Pmc/Corpus">000319</idno><idno type="wicri:Area/Pmc/Curation">000318</idno><idno type="wicri:Area/Pmc/Checkpoint">000036</idno><idno type="wicri:Area/Ncbi/Merge">002014</idno><idno type="wicri:Area/Ncbi/Curation">002014</idno><idno type="wicri:Area/Ncbi/Checkpoint">002014</idno><idno type="wicri:Area/Main/Merge">000050</idno><idno type="wicri:Area/Main/Curation">000050</idno><idno type="wicri:Area/Main/Exploration">000050</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Strength, Stability, and <italic>cis</italic>-Motifs of <italic>In silico</italic> Identified Phloem-Specific Promoters in <italic>Brassica juncea</italic> (L.)</title><author><name sortKey="Koramutla, Murali Krishna" sort="Koramutla, Murali Krishna" uniqKey="Koramutla M" first="Murali Krishna" last="Koramutla">Murali Krishna Koramutla</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>National Research Centre on Plant Biotechnology, Indian Agricultural Research Institute Campus</institution><country>New Delhi, India</country></nlm:aff><country xml:lang="fr">Inde</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Bhatt, Deepa" sort="Bhatt, Deepa" uniqKey="Bhatt D" first="Deepa" last="Bhatt">Deepa Bhatt</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>National Research Centre on Plant Biotechnology, Indian Agricultural Research Institute Campus</institution><country>New Delhi, India</country></nlm:aff><country xml:lang="fr">Inde</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Negi, Manisha" sort="Negi, Manisha" uniqKey="Negi M" first="Manisha" last="Negi">Manisha Negi</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>National Research Centre on Plant Biotechnology, Indian Agricultural Research Institute Campus</institution><country>New Delhi, India</country></nlm:aff><country xml:lang="fr">Inde</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Venkatachalam, Perumal" sort="Venkatachalam, Perumal" uniqKey="Venkatachalam P" first="Perumal" last="Venkatachalam">Perumal Venkatachalam</name><affiliation wicri:level="1"><nlm:aff id="aff2"><institution>Department of Biotechnology, Periyar University</institution><country>Salem, India</country></nlm:aff><country xml:lang="fr">Inde</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Jain, Pradeep K" sort="Jain, Pradeep K" uniqKey="Jain P" first="Pradeep K." last="Jain">Pradeep K. Jain</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>National Research Centre on Plant Biotechnology, Indian Agricultural Research Institute Campus</institution><country>New Delhi, India</country></nlm:aff><country xml:lang="fr">Inde</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Bhattacharya, Ramcharan" sort="Bhattacharya, Ramcharan" uniqKey="Bhattacharya R" first="Ramcharan" last="Bhattacharya">Ramcharan Bhattacharya</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>National Research Centre on Plant Biotechnology, Indian Agricultural Research Institute Campus</institution><country>New Delhi, India</country></nlm:aff><country xml:lang="fr">Inde</country><wicri:regionArea></wicri:regionArea></affiliation></author></analytic><series><title level="j">Frontiers in Plant Science</title><idno type="eISSN">1664-462X</idno><imprint><date when="2016">2016</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>Aphids, a hemipteran group of insects pose a serious threat to many of the major crop species including <italic>Brassica</italic> oilseeds. Transgenic strategies for developing aphid-resistant plant types necessitate phloem-bound expression of the insecticidal genes. A few known phloem-specific promoters, in spite of tissue-specific activity fail to confer high level gene-expression. Here, we identified seven orthologues of phloem-specific promoters in <italic>B. juncea</italic> (Indian mustard), and experimentally validated their strength of expression in phloem exudates. Significant <italic>cis</italic>-motifs, globally occurring in phloem-specific promoters showed variable distribution frequencies in these putative phloem-specific promoters of <italic>B. juncea</italic>. In RT-qPCR based gene-expression study promoter of <italic>Glutamine synthetase 3A (GS3A)</italic> showed multifold higher activity compared to others, across the different growth stages of <italic>B. juncea</italic> plants. A statistical method employing four softwares was devised for rapidly analysing stability of the promoter-activities across the plant developmental stages. Different statistical softwares ranked these <italic>B. juncea</italic> promoters differently in terms of their stability in promoter-activity. Nevertheless, the consensus in output empirically suggested consistency in promoter-activity of the six <italic>B. juncea</italic> phloem- specific promoters including GS3A. The study identified suitable endogenous promoters for high level and consistent gene-expression in <italic>B. juncea</italic> phloem exudate. The study also demonstrated a rapid method of assessing species-specific strength and stability in expression of the endogenous promoters.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Andersen, C L" uniqKey="Andersen C">C. L. Andersen</name></author><author><name sortKey="Jensen, J L" uniqKey="Jensen J">J. L. 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Zhang</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Zheng, C" uniqKey="Zheng C">C. Zheng</name></author><author><name sortKey="Baum, B J" uniqKey="Baum B">B. J. Baum</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Zhou, M" uniqKey="Zhou M">M. Zhou</name></author><author><name sortKey="Li, D" uniqKey="Li D">D. Li</name></author><author><name sortKey="Li, Z" uniqKey="Li Z">Z. Li</name></author><author><name sortKey="Hu, Q" uniqKey="Hu Q">Q. Hu</name></author><author><name sortKey="Yang, C" uniqKey="Yang C">C. Yang</name></author><author><name sortKey="Zhu, L" uniqKey="Zhu L">L. Zhu</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Zou, C" uniqKey="Zou C">C. Zou</name></author><author><name sortKey="Sun, K" uniqKey="Sun K">K. Sun</name></author><author><name sortKey="Mackaluso, J D" uniqKey="Mackaluso J">J. D. Mackaluso</name></author><author><name sortKey="Seddon, A E" uniqKey="Seddon A">A. E. Seddon</name></author><author><name sortKey="Jin, R" uniqKey="Jin R">R. Jin</name></author><author><name sortKey="Thomashow, M F" uniqKey="Thomashow M">M. F. Thomashow</name></author></analytic></biblStruct></listBibl></div1></back></TEI><affiliations><list><country><li>Inde</li></country></list><tree><country name="Inde"><noRegion><name sortKey="Koramutla, Murali Krishna" sort="Koramutla, Murali Krishna" uniqKey="Koramutla M" first="Murali Krishna" last="Koramutla">Murali Krishna Koramutla</name></noRegion><name sortKey="Bhatt, Deepa" sort="Bhatt, Deepa" uniqKey="Bhatt D" first="Deepa" last="Bhatt">Deepa Bhatt</name><name sortKey="Bhattacharya, Ramcharan" sort="Bhattacharya, Ramcharan" uniqKey="Bhattacharya R" first="Ramcharan" last="Bhattacharya">Ramcharan Bhattacharya</name><name sortKey="Jain, Pradeep K" sort="Jain, Pradeep K" uniqKey="Jain P" first="Pradeep K." last="Jain">Pradeep K. Jain</name><name sortKey="Negi, Manisha" sort="Negi, Manisha" uniqKey="Negi M" first="Manisha" last="Negi">Manisha Negi</name><name sortKey="Venkatachalam, Perumal" sort="Venkatachalam, Perumal" uniqKey="Venkatachalam P" first="Perumal" last="Venkatachalam">Perumal Venkatachalam</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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